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1

Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks

Rule, Adam, Birmingham, Amanda, Zuniga, Cristal, Altintas, Ilkay, Huang, Shih-Cheng, Knight, Rob, Moshiri, Niema, Nguyen, Mai H., Rosenthal, Sara Brin, Pérez, Fernando, Rose, Peter W., Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 420 KB

english, 2019

2

The possibilities and limits to dialogue

Rose-Redwood, Reuben, Kitchin, Rob, Rickards, Lauren, Rossi, Ugo, Datta, Ayona, Crampton, Jeremy

Journal:

Dialogues in Human Geography

Year:

2018

Language:

english

File:

PDF, 215 KB

english, 2018

3

[ACM Press the Practice and Experience in Advanced Research Computing - Chicago, IL, USA (2019.07.28-2019.08.01)] Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning) - PEARC '19 - Managing Privilege and Access on Federated Edge Platforms

Breen, Joe, Pierce, Rose, Riedel, Benedikt, Steinman, Mitchell, Stidd, Jason, Truong, Luan, Van, Jeremy, Vukotic, Ilija, Weaver, Christopher, Bryant, Lincoln, Chen, Jiahui, Ford, Emerson, Gardner, Rob

Year:

2019

Language:

english

File:

PDF, 438 KB

english, 2019

4

The Kesgrave Sands and Gravels: ‘pre-glacial’ Quaternary deposits of the River Thames in East Anglia and the Thames valley

James Rose, Colin A. Whiteman, Peter Allen, Rob A. Kemp

Journal:

Proceedings of the Geologists' Association

Year:

1999

Language:

english

File:

PDF, 2.38 MB

english, 1999

5

Lost in the problem: the role of boundary organisations in the governance of climate change

Hoppe, Rob, Wesselink, Anna, Cairns, Rose

Journal:

Wiley Interdisciplinary Reviews: Climate Change

Year:

2013

Language:

english

File:

PDF, 298 KB

english, 2013

6

Fast and simultaneous determination of darunavir and eleven other antiretroviral drugs for therapeutic drug monitoring: method development and validation for the determination of all currently approved HIV protease inhibitors and non-nucleoside reverse transcriptase inhibitors in human plasma by liquid chromatography coupled with electrospray ionization tandem mass spectrometry

Rob ter Heine, Carolien G. Alderden-Los, Hilde Rosing, Michel J. X. Hillebrand, Eric C. M. van Gorp, Alwin D. R. Huitema, Jos H. Beijnen

Journal:

Rapid Communications in Mass Spectrometry

Year:

2007

Language:

english

File:

PDF, 265 KB

english, 2007

7

Blue intensity from a tropical conifer’s annual rings for climate reconstruction: An ecophysiological perspective

Buckley, Brendan M., Hansen, Kyle G., Griffin, Kevin L., Schmiege, Stephanie, Oelkers, Rose, D’Arrigo, Rosanne D., Stahle, Daniel K., Davi, Nicole, Nguyen, Tran Quoc Trung, Le, Canh Nam, Wilson, Rob J

Journal:

Dendrochronologia

Year:

2018

Language:

english

File:

PDF, 5.68 MB

english, 2018

8

Systems Biology of Tomato Fruit Development: Combined Transcript, Protein, and Metabolite Analysis of Tomato Transcription Factor (nor, rin) and Ethylene Receptor (Nr) Mutants Reveals Novel Regulatory Interactions

Sonia Osorio, Rob Alba, Cynthia M.B. Damasceno, Gloria Lopez-Casado, Marc Lohse, Maria Inés Zanor, Takayuki Tohge, Björn Usadel, Jocelyn K.C. Rose, Zhangjun Fei, James J. Giovannoni and Alisdair R. Fe

Journal:

PLANT PHYSIOLOGY

Year:

2011

Language:

english

File:

PDF, 4.51 MB

english, 2011

9

Effects of removing sheep grazing on soil chemistry, plant nutrition and forage digestibility: Lessons for rewilding the British uplands

Marrs, Robert H., Sánchez, Raúl, Connor, Leslie, Blackbird, Sabena, Rasal, Jennifer, Rose, Rob

Journal:

Annals of Applied Biology

Year:

2018

Language:

english

File:

PDF, 1.31 MB

english, 2018

10

Geographies of the COVID-19 pandemic

Rose-Redwood, Reuben, Kitchin, Rob, Apostolopoulou, Elia, Rickards, Lauren, Blackman, Tyler, Crampton, Jeremy, Rossi, Ugo, Buckley, Michelle

Journal:

Dialogues in Human Geography

Year:

2020

File:

PDF, 205 KB

2020

11

The uneven terrain of dialogical encounters and the spatial politics of listening

Rose-Redwood, Reuben, Kitchin, Rob, Rickards, Lauren, Rossi, Ugo, Datta, Ayona, Crampton, Jeremy

Journal:

Dialogues in Human Geography

Year:

2018

Language:

english

File:

PDF, 150 KB

english, 2018

12

A Six-Year Prospective Study of the Prognosis and Predictors in Patients with Late-Life Depression.

Jeuring, Hans W., Stek, Max L., Huisman, Martijn, Oude Voshaar, Richard C., Naarding, Paul, Collard, Rose M., van der Mast, Roos C., Kok, Rob M., Beekman, Aartjan T.F., Comijs, Hannie C.

Journal:

American Journal of Geriatric Psychiatry

Year:

2018

Language:

english

File:

PDF, 1.26 MB

english, 2018

13

Cross-Sectional Transmission Electron Microscopy Sample Preparation Using Focus Ion Beam Machine and Wedge Technique

Li, Du, Zhou, Rose, Zanoya, Rob

Journal:

Microscopy and Microanalysis

Year:

1999

File:

PDF, 2.06 MB

1999

14

Mind the sustainability gap

Joern Fischer, Adrian D. Manning, Will Steffen, Deborah B. Rose, Katherine Daniell, Adam Felton, Stephen Garnett, Ben Gilna, Rob Heinsohn, David B. Lindenmayer, Ben MacDonald, Frank Mills, Barry Newel

Journal:

Trends in Ecology & Evolution

Year:

2007

Language:

english

File:

PDF, 227 KB

english, 2007

15

[ACM Press the Practice and Experience in Advanced Research Computing - Chicago, IL, USA (2019.07.28-2019.08.01)] Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning) - PEARC '19 - Developing Edge Services for Federated Infrastructure Using MiniSLATE

Breen, Joe, Pierce, Rose, Riedel, Benedikt, Steinman, Mitchell, Stidd, Jason, Truong, Luan, Van, Jeremy, Vukotic, Ilija, Weaver, Christopher, Bryant, Lincoln, Chen, Jiahui, Ford, Emerson, Gardner, Rob

Year:

2019

Language:

english

File:

PDF, 672 KB

english, 2019

16

A review of the literature on culture in hotel management research: What is the future?

Rose X.Y. Chen, Catherine Cheung, Rob Law

Journal:

International Journal of Hospitality Management

Year:

2012

Language:

english

File:

PDF, 434 KB

english, 2012

17

Multi-Institutional Partnerships for Higher Education in Africa: A Case Study of Assumptions of International Academic Collaboration

Semali, Ladislaus M., Baker, Rose, Freer, Rob

Journal:

International Journal of Higher Education

Year:

2013

File:

PDF, 197 KB

2013

18

Satisfaction after total knee replacement for osteoarthritis is usually high, but what are we measuring? A systematic review

Klem, Nardia-Rose, Kent, Peter, Smith, Anne, Dowsey, Michelle, Fary, Robyn, SchÃ¼tze, Rob, O'Sullivan, Peter, Choong, Peter, Bunzli, Samantha

Journal:

Osteoarthritis and Cartilage Open

Year:

2020

Language:

english

File:

PDF, 1.75 MB

english, 2020

19

Lost in the problem: the role of boundary organisations in the governance of climate change

Hoppe, Rob, Wesselink, Anna, Cairns, Rose

Journal:

Wiley Interdisciplinary Reviews: Climate Change

Year:

2017

File:

PDF, 32 KB

2017

20

Estimating habitat extent and carbon loss from an eroded northern blanket bog using UAV derived imagery and topography

Scholefield, Paul, Morton, Dan, McShane, Gareth, Carrasco, Luis, Whitfield, Mike G, Rowland, Clare, Rose, Rob, Wood, Claire, Tebbs, Emma, Dodd, Beverly, Monteith, Don

Journal:

Progress in Physical Geography

Year:

2019

Language:

english

File:

PDF, 1.03 MB

english, 2019

21

Thermal plasma spraying for SOFCs: Applications, potential advantages, and challenges

Rob Hui, Zhenwei Wang, Olivera Kesler, Lars Rose, Jasna Jankovic, Sing Yick, Radenka Maric, Dave Ghosh

Journal:

Journal of Power Sources

Year:

2007

Language:

english

File:

PDF, 1.90 MB

english, 2007

22

Geographical Separation of Two Ulex Species at Three Spatial Scales: Does Competition Limit Species' Ranges?

James M. Bullock, Rebecca J. Edwards, Peter D. Carey and Rob J. Rose

Journal:

Year:

2000

Language:

english

File:

PDF, 3.07 MB

english, 2000

23

Geographical separation of two Ulex species at three spatial scales: does competition limit species' ranges?

James M. Bullock, Rebecca J. Edwards, Peter D. Carey, Rob J. Rose

Journal:

Year:

2000

Language:

english

File:

PDF, 3.87 MB

english, 2000

24

Pharmacologic profiling of corifollitropin alfa, the first developed sustained follicle stimulant

Pieter Verbost, Willem N. Sloot, Ursula M. Rose, Renato de Leeuw, Rob G.J.M. Hanssen, Gijs F.M. Verheijden

Journal:

European Journal of Pharmacology

Year:

2011

Language:

english

File:

PDF, 544 KB

english, 2011

25

Assessing fluid responses after coronary surgery: role of mathematical coupling of global end-diastolic volume to cardiac output measured by transpulmonary thermodilution

Breukers, Rose-Marieke BGE, de Wilde, Rob BP, van den Berg, Paul CM, Jansen, Jos RC, Faes, Theo JC, Twisk, Jos WR, Groeneveld, AB Johan

Journal:

European Journal of Anaesthesiology

Year:

2009

Language:

english

File:

PDF, 419 KB

english, 2009

26

The effective oxidation state of a peatland

Worrall, Fred, Clay, Gareth D., Moody, Catherine S., Burt, Tim P., Rose, Rob

Journal:

Journal of Geophysical Research: Biogeosciences

Year:

2016

Language:

english

File:

PDF, 1.10 MB

english, 2016

27

Bioextractive Removal of Nitrogen by Oysters in Great Bay Piscataqua River Estuary, New Hampshire, USA

Bricker, Suzanne B., Grizzle, Raymond E., Trowbridge, Philip, Rose, Julie M., Ferreira, Joao G., Wellman, Katharine, Zhu, Changbo, Galimany, Eve, Wikfors, Gary H., Saurel, Camille, Landeck Miller, Rob

Journal:

Estuaries and Coasts

Year:

2019

File:

PDF, 668 KB

2019

28

David Keen–a dedication

David Bridgland, Jim Rose, Rob Westaway

Journal:

Quaternary Science Reviews

Year:

2007

Language:

english

File:

PDF, 160 KB

english, 2007

29

Carbon budgets of an upland blanket bog managed by prescribed fire

Clay, Gareth D., Worrall, Fred, Rose, Rob

Journal:

Journal of Geophysical Research

Year:

2010

Language:

english

File:

PDF, 504 KB

english, 2010

30

Experiments based on blue intensity for reconstructing North Pacific temperatures along the Gulf of Alaska

Wilson, Rob, D&amp, apos, Arrigo, Rosanne, Andreu-Hayles, Laia, Oelkers, Rose, Wiles, Greg, Anchukaitis, Kevin, Davi, Nicole

Journal:

Climate of the Past

Year:

2017

Language:

english

File:

PDF, 4.93 MB

english, 2017

31

A proposal for a new scenario framework to support research and assessment in different climate research communities

Detlef P. van Vuuren, Keywan Riahi, Richard Moss, Jae Edmonds, Allison Thomson, Nebojsa Nakicenovic, Tom Kram, Frans Berkhout, Rob Swart, Anthony Janetos, Steven K. Rose, Nigel Arnell

Journal:

Global Environmental Change

Year:

2012

Language:

english

File:

PDF, 936 KB

english, 2012

32

Deprivation in the desert: a case report from central Australia

Simon Quilty, Kym Anderson, Jacky Hewitt, Rose Fahy, Tors Clothier, Rob Roseby

Journal:

Year:

2006

Language:

english

File:

PDF, 64 KB

english, 2006

33

IMPACT OF T-CELL DEPLETION STRATEGIES ON OUTCOMES FOLLOWING HEMATOPOIETIC STEM CELL TRANSPLANTATION FOR IDIOPATHIC APLASTIC ANEMIA: A STUDY ON BEHALF OF THE EUROPEAN BLOOD AND MARROW TRANSPLANT (EBMT) SAA WORKING PARTY

Samarasinghe, Sujith, Clesham, Katherine, Iacobelli, Simona, Sbianchi, Giulia, Knol, Cora, Hamladji, Rose-Marie, Socié, Gerard, Aljurf, Mahmoud, Koh, Mickey, Sengeloev, Henrik, Dalle, Jean-Hugues, Rob

Journal:

American Journal of Hematology

Year:

2018

Language:

english

File:

PDF, 1.65 MB

english, 2018

34

Comparing gendered and generic representations of mental illness in Canadian newspapers: an exploration of the chivalry hypothesis

Whitley, Rob, Adeponle, Ademola, Miller, Anna Rose

Journal:

Social Psychiatry and Psychiatric Epidemiology

Year:

2015

Language:

english

File:

PDF, 223 KB

english, 2015

35

Palaeoenvironmental reconstruction of a glaciotectonized Early and Middle Pleistocene land surface, palaeosol and river sediments: Great Sampford, Suffolk, England

READ, JAMES ROSE, ROB A. KEMP, GLYNIS

Journal:

Year:

2000

Language:

english

File:

PDF, 469 KB

english, 2000

36

Definitional Criteria for Patient Transitions Relevant to Prolonged and Long-term Mechanical Ventilation: A Delphi Study

Rose, Louise, Fowler, Rob, Katz, Sherri, Leasa, David, Omand, Mairi, Pedersen, Cheryl, McKim, Douglas

Journal:

Year:

2013

Language:

english

File:

PDF, 302 KB

english, 2013

37

A kit formulation for the preparation of 188Re-lipiodol: preclinical studies and preliminary therapeutic evaluation in patients with unresectable hepatocellular carcinoma

Boschi, Alessandra, Uccelli, Licia, Duatti, Adriano, Colamussi, Paolo, Cittanti, Corrado, Filice, Angelina, Rose, Alison H., Martindale, Andrew A., Claringbold, Paul G., Kearney, Dermot, Galeotti, Rob

Journal:

Nuclear Medicine Communications

Year:

2004

Language:

english

File:

PDF, 286 KB

english, 2004

38

SPIE Proceedings [SPIE SPIE Defense, Security, and Sensing - Orlando, Florida (Monday 5 April 2010)] Chemical, Biological, Radiological, Nuclear, and Explosives (CBRNE) Sensing XI - Extension of a standoff explosive detection system to CBRN threats

Ford, Alan, Waterbury, Rob, Rose, Jeremy, Pohl, Ken, Eisterhold, Megan, Thorn, Thelma, Lee, Keesoo, Dottery, Ed, Fountain III, Augustus W., Gardner, Patrick J.

Year:

2010

Language:

english

File:

PDF, 324 KB

english, 2010

39

Normalized burn ratios link fire severity with patterns of avian occurrence

Rose, Eli T., Simons, Theodore R., Klein, Rob, McKerrow, Alexa J.

Journal:

Landscape Ecology

Year:

2016

Language:

english

File:

PDF, 1.13 MB

english, 2016

40

Winners and losers in a long-term study of vegetation change at Moor House NNR: Effects of sheep-grazing and its removal on British upland vegetation

Milligan, Gregg, Rose, Rob J., Marrs, Rob H.

Journal:

Ecological Indicators

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

41

Analysis of Nkx3.1:Cre-driven Erk5 deletion reveals a profound spinal deformity which is linked to increased osteoclast activity

Loveridge, Carolyn J., van ’t Hof, Rob J., Charlesworth, Gemma, King, Ayala, Tan, Ee Hong, Rose, Lorraine, Daroszewska, Anna, Prior, Amanda, Ahmad, Imran, Welsh, Michelle, Mui, Ernest J., Ford, Catrio

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 7.47 MB

english, 2017

42

A Greenhouse Gas Emissions Inventory for Pennsylvania

Rose, Adam, Neff, Rob, Yarnal, Brent, Greenberg, Howard

Journal:

Journal of the Air & Waste Management Association (1995-)

Year:

2005

Language:

english

File:

PDF, 372 KB

english, 2005

43

Analysis of the Microbial Community Associated with a Bioprocess System for Bioremediation of Thiocyanate- and Cyanide-Laden Mine Water Effluents

Huddy, Rob, Kantor, Rose, van Zyl, Wynand, van Hille, Robert P., Banfield, Jill, Harrison, Susan T.L.

Journal:

Advanced Materials Research

Year:

2015

Language:

english

File:

PDF, 564 KB

english, 2015

44

A molecular budget for a peatland based upon 13 C solid state nuclear magnetic resonance.

Moody, Catherine S., Worrall, Fred, Clay, Gareth D., Burt, Tim P., Apperley, David C., Rose, Rob

Journal:

Journal of Geophysical Research: Biogeosciences

Year:

2018

Language:

english

File:

PDF, 626 KB

english, 2018

45

DIPG-07. GENOMIC ANALYSIS METHODS FOR IDENTIFICATION OF CANCER DRIVER PATHWAYS IN CHILDHOOD BRAIN TUMORS

Sanders, Lauren, Rose-Dey, Brittany, Beale, Holly, Pfeil, Jacob, Kephart, Ellen, Learned, Katrina, Durbin, Ann, Bjork, Isabel, Currie, Rob, Morozova, Olena, Agnihotri, Sameer, Salama, Sofie, Haussler,

Journal:

Year:

2018

Language:

english

File:

PDF, 87 KB

english, 2018

46

The European Trauma Course (ETC) and the team approach: Past, present and future

Carsten Lott, Rui Araujo, Mary Rose Cassar, Stefano Di Bartolomeo, Peter Driscoll, Ivan Esposito, Ernestina Gomes, Peter Goode, Carl Gwinnutt, Michael Huepfl, Freddy Lippert, Giuseppe Nardi, David Rob

Journal:

Year:

2009

Language:

english

File:

PDF, 122 KB

english, 2009

47

Palaeoclimate, sedimentation and soil development during the Last Glacial Stage (Devensian), Heathrow Airport, London, UK

James Rose, Jerry A. Lee, Rob A. Kemp, Philip A. Harding

Journal:

Quaternary Science Reviews

Year:

2000

Language:

english

File:

PDF, 11.10 MB

english, 2000

48

[Society of Petroleum Engineers SPE Annual Technical Conference and Exhibition - (2005.10.9-2005.10.12)] Proceedings of SPE Annual Technical Conference and Exhibition - Field Test Results of the New Combinable Magnetic Resonance Autotune Logging Tool

Cao Minh, Chanh, Bordon, Ernesto, Hurliman, Martin, Smithson, Anthony, Kovats, James, Badry, Rob, Claverie, Michel, Haiyan, Qian, Davenport, Mike, Rose, Hilary, Womack, Greg

Year:

2005

Language:

english

File:

PDF, 1.36 MB

english, 2005

49

The multi-annual nitrogen budget of a peat-covered catchment — Changing from sink to source?

Fred Worrall, Gareth D. Clay, Tim P. Burt, Rob Rose

Journal:

Science of The Total Environment

Year:

2012

Language:

english

File:

PDF, 4.43 MB

english, 2012

50

A randomized controlled trial of the effectiveness of a pre-recruitment primer letter to increase participation in a study of colorectal screening and surveillance

Paul, Christine, Courtney, Ryan, Sanson-Fisher, Rob, Carey, Mariko, Hill, David, Simmons, Jody, Rose, Shiho

Journal:

BMC Medical Research Methodology

Year:

2014

Language:

english

File:

PDF, 238 KB

english, 2014

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